Keselamatan dari Toyota Agya adalah sebagai berikut:
| Varian | Toyota Agya 1.0L G A/T | Toyota Agya 1.2L G M/T | Toyota Agya 1.0L G M/T | Toyota Agya 1.2L TRD M/T | Toyota Agya 1.2L TRD A/T | Toyota Agya 1.2L G A/T |
| Peringkat Euro NCAP | ||||||
| Peringkat ASEAN NCAP | ||||||
| Jumlah airbag | ||||||
| Airbag kursi penumpang / utama | ||||||
| Airbag sisi depan / belakang | ||||||
| Airbag lutut | ||||||
| Pengingat sabuk pengaman | ||||||
| Active emergency braking system | ||||||
| Tire Pressure Monitoring System (TPMS) | ||||||
| Lane Departure Warning System (LDWS) | ||||||
| Lane Keeping Assist System (LKAS) | ||||||
| Collision avoidance system(CAS) | ||||||
| Anti-lock Braking System (ABS) | ||||||
| Electronic Brake-force Distribution (EBD) | ||||||
| Sistem kontrol traksi | ||||||
| Vehicle Stability Control (VSC) | ||||||
| Child safety lock | Y | Y | Y | Y | Y | |
| ISOFIX | ||||||
| Security alert | ||||||
| Immobilizer | Y | Y | Y | Y | Y | Y |
